Clone Identification by Sequence Similarity and Mapping Results

I. The lab designations for all clones with putative sequence identities are listed in the first column. Those with a designation of rsp, spf, or beginning with "2" or "5" were isolated from endosperm libraries. Those beginning with "6" originated from an etiolated seedling library. Those denoted "csu" were previously isolated from a mature vegetative tissue library (obtained from Stratagene) and sequenced by Chris Baysdorfer at California State University-Hayward; many have since been mapped at the University of Arizona.
II. In the second column, the GenBank accession number assigned to this sequence is reported when available.
III. In the third column, the most significant similarity found through comparison of our sequence with the GenBank database is reported. Comparison is examined at the amino acid similarity level by the subroutine BLASTX and if not successful in identifying a match, subsequently at the nucleic acid level by BLASTN. Strong similarities at the amino acid level are usually indicated by a BLASTX score of 180 or better. Weaker matches are usually indicated by a suffix of "homolog" in this field. Alternatively if protein motif similarities are determined through the use of the BLOCKS program, then the term "motifs" is usually added as a suffix in this section.
IV. In the fourth column, the highest BLASTX score is reported for the similarities detected (suffixed by "X"). If this score is preceded by ">", this indicates that multiple regions of similarity were detected which often reflect a much higher level of significance than indicated by the highest BLASTX score for individual blocks. If the score is followed by "N", this score represents a BLASTN score. Alternatively, "%" reflects the amount of identity between the two sequences.
V. In the fifth column, the accession numbers from GenBank, dbEST, PIR, or SwissProt of the closest match are reported. If the identity was established at the level of protein motifs through the use of the BLOCKS routine, this is indicated.
VI. In the sixth column, we report an indication from colony screening as to whether the sequence is abundantly (Abnd) or rarely expressed and if the former, in what tissues (S=seedling, E=endosperm).
VII. In the seventh column, an indication of the type of pattern in a Southern hybridization to maize genomic DNA is reported as being either a "Complex" pattern (more than three prominent fragments observed) or "Simple" (three or less).
VIII. In the eighth column are given the UAZ map designations for those clones which have been mapped recombinationally in the Brookhaven RI lines. Mnemonics are given for those clones which exhibit some extensive homology to an entry in GenBank. "gfu" refers to a clone that has been mapped but for which sequence information is not yet available or which did not detect any significant homology within GenBank..
IX. The last column reports the chromosomal locations detected by this mapping. Here we use the "Binning" as developed by the maize group at Missouri, to define chromosomal locations along each chromosome. Bins were assigned relative to the 1993-1994 University of Missouri-Columbia Maize RFLP map [ED. NOTE: Please see the 1995 UMC map - several bins and bin boundaries have been modified as a result of refinements in scoring and analysis].
The Maize cDNA Project is the result of a collaboration between groups at three institutions:

Tim Helentjaris and Coworkers Chris Baysdorfer and Coworkers Rob Ferl & Ernie Almira
Dept. of Plant Sciences Dept. of Biol. Sci., School of Science Interdisciplinary Ctr. for Biotechnol. Res.
University of Arizona California State University, Hayward DNA Sequencing Core
Tucson, AZ 85721 Hayward, CA 94542 University of Florida
ph. (602) 621-8746 ph.(510) 881-3459 P.O. Box 100695
fax -7186 fax -2035 Gainesville, FL 32611-0695
helnjars@ccit.arizona.edu cbaysdor@s1.csuhayward.edu ph. (904) 392-1928, ext. 301
fax -4072
robferl@nervm.nerdc.ufl.edu

Clones with Significant Indications of Function through Sequence Analysis
Similar Sequence
I*
Clone Designation
II
GenBank Access. #
III
Putative Gene Product
IV
Score
V
Access #
VI
Express. Pattern
VII
Genomic Complexity
VIII
Locus Name
IX
Genomic Location
2C01H10
5C05F10
6C02G05
T18751
T15301
T18435
triosephosphate isomerase - maize562XA25501Abnd/SComplexuaz93(tpi)
uaz296(tpi)
2.04,3.04,
8.02-8.03
csu142T12737sugar transport protein homolog - yeast96XS30811Simplecsu142(sut)2c
rsp12,rsp64
5C04A07,5C04D10,
5C07G02,5C11D03
T14662
T14713
T23326
T25261
sucrose synthase - maize564XL01626Abnd/ESimpleuaz154(sh1)9.02
5C01G05T18269glucosamine-fructose-6-phosphate aminotransferase 410XP14742RareComplexuaz309(cht)3.10,10.00
6C04B04,6C06C10T15330b-glucosidase - maize662XX74217Abnd/SSimpleuaz339(glu)3.04,10.04
6C01G09T20392b-glucosidase - maize85%X74217Abnd/SComplexuaz340(glu)10.04,10.05-10.0 6
5C04B10T14684soluble starch synthase - rice184XD16202RareComplexuaz218(strs)3.07,4.05-4.06
5C04H03
5C10A05
T18721
T25209
waxy gene- maize1609NX03935Rare?
5C04H06,5C06D08
5C10G07
T18724
T14743
T25240
ADPG pyrophosphorylase (sh2) - maize520XS48563Abnd/E--1,3L,4,5
5C06E05
5C07B08
T18304
T18637
ADPG pyrophosphorylase (embryonic) - potato664XS18238RareComplexagp16.11
5C02H07
6C01B06,6C02D08
T14797
T20333
T18408
UDPG pyrophosphorylase - potato
rice dbEST
546X
707N
P19595
D24990
RareSimpleuaz194(udp)2.08
5C05F05T15298starch branching enzyme I - maize587XJT0968RareSimpleuaz265 (sbe1)2.06,6.02-6.03
5C03G08
5C09B11
T14653
T14654
T23384
starch branching enzyme 2 - maize523XL08065RareSimpleuaz229 (sbe2)3.02
rsp33a-glucan phosphorylase - potato361XS15531-
Rice10fructose-biphosphate aldolase - rice-----Simpleuaz291(fda)8.08
5C07H03
5C08C04
5C11D06
T23335
T23349
T25264
alcohol dehydrogenase 1 - maize
rice
230X
537N
A00342
X16296
Rare1.11-1.12
csu149T12742short chain alcohol dehydrogenase (ts2 homolog)-Simplecsu149(sca5.00
5C04A01T14656sorbitol dehydrogenase similarity - human129XQ00796RareSimpleuaz152(sdh)9.07-9.08
2C02D11
5C01C11, 5C01F03,
5C01H01, 5C02C11,
5C02E03, 5C04E09,
5C05F03, 5C09G12
5C10H04, 5C11A01
6C01H03, 6C02B05
csu140, csu152
T14755
T14761
T14789
T14727
T15296
T20366
T23281
T18391
T18686
T23408
T25245
T25250
M95076
glyceraldehyde-3-phosphate dehydrogenase
- maize
rice dbEST
Arabidopsis dbEST
583X

1327N
1293N
PQ0178

D16096
M64116
RareSimpleuaz73(gpa)
uaz190(gpa)
uaz261(gpa)
uaz271(gpa)
4.03-4.04,5.07
5C10H08T25248anthranilate synthase 1 - Arabidopsis537XJQ1684Rare?
csu65M95067anthranilate synthase 2 - yeast58%P00937--
6C02A09T18386a-ketoglutarate dehydrogenase - yeast>225XP20967Abnd/ESimpleuaz215(odo)5.02-5.03,5.09
5C03E12, 5C06C08,
5C06D11, 5C10G06
T18293
T18302
T23305
T25239
a-ketoglutarate dehydrogenase - human
rice dbEST
>179X
820N
Q02218
D23067
RareComplex?
5C04E05, 5C07D08,
5C07F11
T14721
T14722
T18645
T23324
monodehydroascorbate reductase - Cucumis110XD26932RareSimpleuaz204(dar)5.09
csu324citrate synthase - pig67%M21197--
5C01C07, 5C09B01
csu158
T14753
T23378
enolase - maize
rice dbEST
Arabidopsis dbEST
319X
784N
751N
X55981
D21305
T14216
RareSimplecsu158(eno1)9.03
5C03H06, 5C05H04,
5C08G09
T15312
T23313
T23369
ketol-acid reductase isomerase - Arabidopsis
rice dbEST
538X
355X
X68150
36767
Abnd/EComplexuaz269(kri)2.07,6.01,
6.10,8.04
csu198T18783malate dehydrogenase - pig69%M29463--
csu77M95069malate dehydrogenase - maize61%M95069-Simplecsu77(mdh)1.10
csu16NADP malic enzyme - maize100%J05130-Simplecsu16(me)3.02,6
csu262T188246-phosphoglucanate dehydrogenase - algae66%X58719--
5C06D06, 5C09B06T18298
T23382
pyruvate dehydrogenase E1 complex - human316XS13825RareSimpleuaz301(pyrd)1.08
5C04A04,5C04C06,
5C06G09, 5C07E01,
5C09B04, 5C09C05
5C11B03,
csu155
T18315
T18678
T18648
T23380
T23390
T25252
pyruvate phosphate dikinase - maize534XM58656Abnd/ESimpleuaz127, uaz172, uaz183, uaz188, uaz196, uaz319 (pdk)
6.07,8.05
5C05D10, 5C09E04,
5C10C04
T15339
T23401
T25216
NADH-ubiquinone oxidoreductase - cow
Arabidopsis dbEST
169X
>77
P80266
14420
RareComplexuaz266(nad)1.04,9.05-9.06
6C02C04T15328catalase1 - maize212XP18122Abnd /ESSimpleuaz360 (cat1)5.05
rsp27catalase2 - maize166NX54819-1s
6C02C06, 6C06C07T18399catalase3 - maize272XL05934Abnd/SSimplemitoch?4L
6C02D10T18410peroxidase (lignin form enz) - rice120XS22087RareSimpleuaz235(px)2.06
csu182T18842superoxide dismutatase - maize98%X17564-
6C02E12, 6C02F07
csu160
T18420
T18426
T12746
lipoxygenase L-2 - rice159XJ03211Abnd/SComplexuaz225(lox)7.04
6C06B11T15323cytochrome P450 hydroxylase - S.melongena143XX70981Abnd/SSimpleuaz338 (p450)7.01-7.02
csu25T12664cytochrome P450 similarity - rat88XP33274-Simplecsu25(p450)3.10
5C05B02T15273thioredoxin - Arabidopsis
rice dbEST
200X
175X
P29448
37996
RareSimple?
csu111T12723glutathione reductase - pea223XP27456--
csu44glutathione-S-transferase - maize100%X04455--
csu40T12674Glutaredoxin similarity - E. coli
Arabidopsis dbEST
74%
298N
P00277
T13672
-Simple
Rice12glutamic dehydrogenase - rice---Complexuaz292(gdh)7.04
rsp13, rsp145
5C09H06
T23410aspartate amino transferase - rice410XS18891Rare?
5C04B05, 5C07G11T14674
T14675
T23332
alanine transaminase - millet671XS28429RareSimpleuaz158(alt)5.05
5C03D02T23295glutamate 1-semialdehyde aminotransferase
rice dbEST
100X
530N
P30268
D24532
Abnd /ES?
csu194T18851methionine synthase - E. coli60%M87625-
6C01G01T20390S-adenosyl methionine synthase - rice78%Z26867Abnd/SComplex?
5C01E09T18260adenosylmethion-8-amino-7-oxononanoate aminotransferase - bacteria>167XP22805RareComplexuaz113(aaa)2.02-2.03,
10.08
5C01H11T18277s-adenosyl-l-homocysteine hydrolase
rice dbEST
Arabidopsis dbEST
539X
492X
195X
D16138
37567
14494
RareSimpleuaz145(ahh)4.03-4.04
csu156M95077phenylalanine ammonia lyase - rice91%X16099-Complexcsu156(pal)2s,4s,5L
5C01C04, 5C02C04,
5C08F11
T14750
T14778
T23368
peptidyl-prolyl c-t isomerase - maize
rice dbEST
500X
1092N
P21569
D16134
Abnd/ESimpleuaz238(ppi)5.07
5C05G07, 5C06F04,
5C08A08, 5C11B04
6C01F05
fplo
T15306
T18307
T20387
T23340
T25253
protein disulfur isomerase - barley
Arabidopsis dbEST
rice dbEST
475X
217X
114X
L33252
34988
37958
RareSimpleuaz298(pdi)
uaz239(pdi)
2.10,4.02
5C05C09, 5C10E02T15280
T25224
hypothetical 42.8kd protein - yeast 221XP32615RareComplexuaz295(orf)2.05,3.03,
5.07
5C01E01
6C01B08
T18661
?
ubiquitin precursor - maize
rice dbEST
307X
848N
S04863
D25067
Abnd/ESimpleuaz247(ubi)4.11
5C08E11T23365ubiquitin precursor - sunflower
Arabidopsis
rice
310X
308X
305X
S17435
S01425
P50380
Rare?
csu204T18788ubiquitin carrier protein - wheat73%M74077--
2C06C11
5C02F11, 5C04D06
5C05D12, 5C07E09
T14794
T14707
T14708
T15289
T18767
T23320
ubiquitin-conjugating enzyme E2 - wheat611XP16577RareSimpleuaz102(uce)
uaz206(uce)
6.01
csu269
spf1, spf11
nucleoside diphosphate kinase - mouse191XM65037 -Simpleuaz31(ndk)
uaz10(ndk)
1.05
spf4nucleoside diphosphate kinase - Spinacia241XS24165-Simple uaz91(ndk)7.04
csu269T18831nucleoside diphosphate kinase - rice83%D16292--
5C10C03T25215Acyl-CoA binding protein - Brassica
Arabidopsis
dbEST
rice dbEST
229X
483N
529N
X77134
T04081
D28303
Rare?
2C02C10T18756acyl carrier protein - maize170NX57956-Simpleuaz6(acpt)3.05
2C01H08T18750acyl carrier protein reductase - Cuphea
Arabidopsis
dbEST
>255X
>112X
S19832
33679
-Simpleuaz99(acpr)10.04
5C02D03,5C02H03T23282
T23286
colinephosphate cytidylyltransferase - rat
Arabidopsis dbEST
rice dbEST
107X
83X
103X
P19836
49925
D28176
Rare?
csu265T18827cycloartenol synthase - Arabidopsis66%U025550--
6C06C04T15326enoyl-CoA hydratase - rat95XP07896Abnd/SSimpleuaz348(ech)8.05
6C06A05, 6C06A06
6C06B04
T15316
T15317
T15318
mevalonate kinase similarity - rat72XP17256Abnd /ESSimpleuaz337(mvk)6.08,8.04
5C03E07, 5C06C02T23301
T18289
oleosin KD18 - maize703NJ05212??
5C02A01
csu136, csu205
T14763
M95074
phospholipid transfer protein - maize222XJ04176RareSimplecsu136(plt)10s
5C03D06T23297d(24)-sterol C-methyltransferase - yeast
rice dbEST
115X
104X
P25087
D24567
Rare?
csu125M95073chloroplast carbonic anhydrase - pea59%X52558--
6C02A04T18381CP29 (CAB-binding protein homolog?) Arabidopsis>180XX71878RareSimpleuaz200(cab)7.04
csu66M95068Chlorophyll A/B-binding protein - rice74%D00642-Complexcsu66(cab)8s
csu71Chlorophyll A/B-binding protein - maize99%X14794-Complexcsu71(cab)1L
csu102T12718Chlorophyll A/B-binding protein - rice93%X13909-Complex-
csu117T12725Chlorophyll A/B-binding protein - Arabidopsis72%M63931--
csu224T18804Chlorophyll A/B-binding protein - maize90%X55892--
csu229T1880916kd O2 evolving factor - Spinacia62%X05512--
csu74T12699ferredoxin - maize95%M73828-Simple?
5C03F05T23307sulfite reductase similarity - cyanobacteria73XP30008Abnd/S?
6C01D01T20381PEP carboxylase - maize99%X15238Abnd /ES?
csu18, csu233, csu237, csu267T12659
T12660
T18812
T18816
T18829
photosystem 1 subunit - barley66%X66428--
csu67T12694
T12695
photosystem K-1 - barley63%L12707--
csu185, csu257T18823plastocyanin - barley65%Y00704--
6C02C05T18398RUBISCO, lg subunit - maize330XP00874Abnd/SSimple-Chloroplast
5C11D08T25266mitochondrial adenylate kinase - rat108XJQ1945Rare?
5C04B04,5C05A03T14672
T14673
T15269
ATP synthase a mitochondrial similarity - yeast73XP07251RareSimpleuaz144(atp)
uaz254(atp)
4.05-4.07,5.09
5C04E07T14725ATP synthase b mitochondrial - maize
Arabidopsis dbEST
rice dbEST
655X
527X
>242X
P19023
46770
37494
RareComplexuaz243(atp)3.08,6.08,
8.04
csu26ATP/ADP mitochondrial translocator - maize 100%X02842 -Simplecsu26(amt)5.08
5C04A11T14665Bt1 precursor - maize183XP29518RareComplexuaz155(bt1)10.04
2C01F03T18745Bt1-similarity?, MCP similarity? - maize93Xmzebtia-Complexuaz25(mcp)2.06,5.02-5.03,8. 04
5C02F05, 5C02H10T14791
T18669
mitochondrial carrier protein - yeast115XP32331RareComplexuaz282(mcp)1.06
csu68T12696
T12697
ADP,ATP carrier protein. precurser - potato>98S17917-Simple-
6C02E07T18416ATPase vacuolar, nuclear binding subunit - barley323XL11862Abnd/EComplexuaz223(atp)9.04
csu30M95063ATPase vacuolar, proteineolipid subunit85%M73232-Simplecsu30(atp)3.05
csu37T12671ATPase vacuolar, 54-kDa subunit - yeast89XD13916 -Simple-
csu220T18800possible pyrophosphatase? - rice91%D15382---
5C02E08,5C05B01T14790
T15272
PPase, vacuolar membrane proton pump - Arabidopsis>265XP31414RareComplexuaz280(pps)4.00,9.07
5C06E01,5C07D01T18303
T18643
voltage dependent anion channel (porin) - maize429XX77733RareSimpleuaz312(por)2.06
5C05F04T15297cytochrome c & c1 heme lyase motifs
rice dbEST
--
314X
BLOCKS
36333
RareSimpleuaz262(gfu)2.06
5C08B12T2334640s ribosomal protein S3 - Xenopus
Arabidopsis
dbEST
194X
485N
P02350
T21989
Rare--
6C01B02T2033240s ribosomal protein S4 - rice76%D23071Rare--
5C06A11T1828340s ribosomal protein S5 - rat495XP24050RareSimpleuaz308 (rps5)8.02
5C01A1240s ribosomal protein S6 homolog - tobacco108XS25550Abnd/EComplexuaz119(rps6)7.05,8.08, 9.05-9.06
5C01A09, 5C04G09,
csu34
T18658
T18712
T18713
M95064
40s ribosomal protein S8 homolog - human>242XP09058RareSimpleuaz115(rps8)4.08-4.09
5C02F12
6C02A02
T14795
40s ribosomal protein S11 - maize333XP25460Abnd/SComplexuaz251 (rps11)2.02-2.03, 3.07,6.08,
8.04,
10.05-10.07
5C08C03T2334840s ribosomal protein S12 - rat
rice dbEST
216X
966N
M18547
D23869
Rare-
5C01H07T1827540s ribosomal protein S14 - maize438XP19951Rare-
2C01G06T1874740s ribosomal protein S21 - yeast>70XP05764-Complex-
csu28M9506240s ribosomal protein S22 - Xenopus72%M34706--
5C01E10, 5C06G08T18261
T18314
40s ribosomal protein S24 - human175XP16632RareComplex-
5C09A02T2337340s ribosomal protein S27 - rat
rice dbEST
331X
841N
P24051
D23139
Rare-
5C02D01, 5C06G06T14781
T18312
40s ribosomal protein S27A - maize325XJS0657RareComplexuaz249 (rps27a)1.08,3.04,
8.04,8.10
5C01A05T1865440s ribosomal protein S28 - rat232XP25112RareSimpleuaz146 (rps28)1.01
5C03H03, 5C04D11,
5C05D07, 5C09E10,
5C09G08, 5C11D05
T14714
T14715
T15285
T23312
T23403
T23406
T25263
60s ribosomal protein L5 (5s rRNA-binding protein)- yeast
rice
Arabidopsis
263X

442N
405N
P15125

S39486
Z17506
Rare Simpleuaz189(rpl5)
uaz260(rpl5)
1.01,3.05
rsp8160s ribosomal protein L7 - human220XR5HU7--2,10
5C01D03, 5C01F07
5C01H05, 5C02H06,
5C04F09
T14756
T14796
T18266
T18273
T18699
60s ribosomal protein L10e homolog - yeast87XP15826RareComplexuaz198 (rpl10)3.10
5C05D11, 5C07G06T15288
T23329
60s ribosomal protein L12 - human
Arabidopsis
rice dbEST
268X
142X
553N
P30050
S29452
D15738
Rare-
5C02E11, 5C03E11,
5C03G09, 5C04D09
T14711
T14712
T23283
T23304
p23 tumor specific transpl Ag (L13) - human
Arabidopsis
rice dbEST
387X
381X
934N
A44367
S37230
D24830
RareSimpleuaz208(tta)
uaz126(tta)
1.12
csu245
5C09E05
T2340260s ribosomal protein L14 - Xenopus
Arabidopsis
dbEST
179X
455N
X05025
T21082
Rare-
5C05G01T1530360s ribosomal protein L17 - barley308XS35101RareComplexuaz297 (rpl17)2.07,6.06,
8.03
5C04B03, 5C04G01,
5C06C05
csu36
T14670
T14671
T14735
T18291
M96065
60s ribosomal protein L19 - human495XP14118RareSimplecsu36(rpl19)
uaz157 (rpl19)
uaz213 (rpl19)
3.10,4.05-4.08
5.05
5C01A04T1865360s ribosomal protein L24 homolog - tobacco62XM87838RareComplexuaz270 (rpl24)4.08-4.09
5C02F01, 5C02F07T23284
T23285
60s ribosomal protein L30A - yeast
Arabidopsis
rice dbEST
184X
928N
865N
P04449
Z26463
D23828
RareComplex-
5C05D03, 5C06C03
5C10D04,
6C01D02
T15284
T18290
T20340
T25220
60s ribosomal protein P2 - yeast
rice dbEST
222X
846N
P08094
D22651
RareComplexuaz294(lap2)10.08
csu236T18815translation initiation factor 2 - bacteria54%X04399- -
6C02E11T18419translation initiation factor eif2 - human160XL19161Abnd/SSimpleuaz224(if2)7.04
6C01A08T20330translation initiation factor 4F - wheat>84XM95747Abnd /SESimple?
csu175, csu203
5C06C07, 5C07H01,
5C09D04
T18787
T18836
T18292
T23333
T23399
translation initiation factor 5A - tobacco
Arabidopsis
rice dbEST
354X
365X
998N
P24921
S31362
D24702
Abnd/EComplexuaz303(if5)7.04
5C03C06, 5C04H09,
5C08H09, 5C10G09
csu116, csu226
rsp35, rsp37
T14798
T14745
T18806
T18726
T23372
T25242
M95072
elongation factor 1a - Arabidopsis611XP17786RareComplexuaz220(eif)6.02-6.03,6.06,
7.04,8
5C04C04T14690
T14689
elongation factor 1g - Arabidopsis
rice dbEST
215X
684N
L17307
D22778
RareComplexuaz161(eif)3L,4.10,
6.02-6.033,9.05- 9.06
5C10C06T25217elongation factor 1g -
Arabidopsis
rice
405X
405X
501N
S36462
S36462
D15948
Rare?
5C10A11T25212elongation factor Tu (Ct) - Arabidopsis231XP17745Rare?
5C03H10,5C10H03
csu63
T12693
T23314
T25244
chaperone DNAJ homolog - Allium
Arabidopsis
584X
481X
S42031
S35588
Abnd /ES?csu63(cdj)?
csu52
rsp30
chaperone DNAJ similarity, nuclear envelope protein - yeast60%X56560- -uaz109(cdj)3.01
6C01A04, 6C02E06T20328
T18415
chaperonin 10kd chloroplast - pea>276XQ02073Abnd /ESSimpleuaz222 (cpn10)4.07
6C01D12T20345chaperonin (RUBISCO-binding protein, b-subunit ) - rape
Arabidopsis dbEST
317X

501N
P21241

Z18404
Abnd /ES?
5C01H04, 5C02D08
5C06H12, 5C08D04,
5C10A02
T18272
T14785
T18326
T23356
T25208
CD4B (chloroplast ATP-binding chaperonin) - tomato
Arabidopsis ERD1 gene
rice dbEST
596X

461N
957N
P31542

D17582
D29692
RareSimpleuaz242(chp)10.04
5C03E09T23302CLP-TRYBB (chloroplast ATP-binding chaperonin?) - trypanosome82XP31543Abnd/E?
csu209
5C09H04
T18792
T23409
GOS2 - rice201XP33278--
5C06G10T18316annexin (synexin) - Dictyostelium134XP24639RareSimpleuaz320(anx)6.01
5C02D02, 5C04G12,
5C05A12, 5C07E12,
5C09D07
T14782
T14740
T15271
T23321
T23396
protein prenyltransferase motifsBLOCKSRareSimpleuaz255(gfu)
uaz277(gfu)
3.02
5C09H10T23411Sec61 b-subunit - Arabidopsis118XZ26753Rare?
2C07F04T18781signal recognition part recept a subunit- dog152XA24570-Simpleuaz8(spr)3.06-3.07
5C08B07T23344signal recognition part recept 9kd protein - C. elegans179XP34642Rare?
5C01B12, 5C09C01,
5C09C07
T14746
T23387
T23391
aspartyl-tRNA synthetase a chain - rat429XP15178RareComplexuaz132(dts)5.05-5.06
6C02G11T18439seryl-tRNA synthetase homolog - yeast99XP07284Abnd /ESComplexuaz236(strs)2.06,9.04
2C01B05T18731
T18732
19kd a zein 19A2 - maize>355XS15656Abnd/EComplexuaz49 (zp19/22)2.02-2.03,4.01
2C06H03
spf19, spf24
T1877419kd a zein 19A20 - maize539Xzizm2Abnd/EComplexuaz68 (zp19/22)4.01
2C01B06T1873319kd a zein 19A30 - maize228XS21970Abnd/EComplexuaz49 (zp19/22)4.01
2C06H04T1877519kd a zein 19AB1 - maize363XS03417Abnd/E-
5C01H08, 5C04H01
5C10F09,
T14762
T18717
T18718
T25235
19kd a zein 19C2 - maize622XP06677Abnd/EComplex-
5C03B07, 5C10F12T25206
T25237
19kd a zein CLO - maize317XP06675Abnd/EComplexuaz219 (zp19/22)4.01
5C02A08, 5C06F03
spf6, spf28
T14767
T18306
19kd a zein 19D1 - maize563XP06678Abnd/ESimpleuaz5(zp19 /22)
uaz272 (zp19/22)
1.05
5C03G02, 5C11E08
spf20
T18673
T25269
19kd a zein PMS2 - maize434XP24450Abnd/EComplexuaz149 (zp19/22)4.01
2C06D05T1876819kd a zein ZG31A - maize>190XS21965Abnd/EComplex-
5C04D05T1470622kd a zein pML1 - maize315XX14334Abnd/EComplex-
5C03B06, 5C04F08
5C10H10,5C11C04
T18672
T14733
T25249
T25258
22kd a zein PZ22.1 - maize>299XP04700Abnd/EComplexuaz185 (zp19/22)4.01
5C02C05, 5C02C08T14751
T14780
22kd a zein PZ22.3 - maize559XP04698Abnd/EComplex-
spf10
5C10E04
T2522622kd azein ZA1 - maize569XB22831Abnd/E-
2C07D02
5C02A02, 5C02A03,
5C04E12, 5C04G06
spf8
T14764
T18780
T18689
T18708
T18662
16kd b zein ZC1 - maize>523XP06673Abnd/EComplexuaz169 (zp16)6.01
5C05D05, 5C07F10T23316
T23323
10kd d-zein - maize407XJA0086Abnd/ESimple-6.06,9.04
rsp80, rsp92g zein - maize>217Xzmzm19Abnd/ESimple-7s
g zein g zein - maizeSimpleuaz327(gz)2.07
6C01C02T20336g zein genomic region similarity - maize207NX58197RareSimple?
5C04B07T14678
T14679
glutenin similarity - wheat
rice dbEST
>73X
712N
A30843
D21910
RareSimpleuaz230(gfu)4.05-4.06,6.10
5C07G01T23325napin gene - Brassica napus577NM64633Rare?
5C09A06T23374acylamino acid-releasing enzyme - pig106ND00524Rare?
csu223T18803cystatin - maize90%D10622--
5C04A08, 5C09B03,
5C09C03
rsp96, rsp111
T14663
T23379
T23389
chymotrypsin inhibitor - barley292XS37493RareSimpleuaz232(sci)2.09
6C02H08T18444lysosomal proteinease similarity - wheat?RareSimpleuaz234(pros)2.06
5C07B07
6C01C07
T18636
T20337
mitochondrial processing protease - rat458XB48529RareComplex?
2C01C07T18736oligopeptidase A - bacteria>102XA42298-Simpleuaz100(prc)10.02-10.03
5C01H12T18278proteasome C5 complex - human288XP20618RareSimpleuaz226(prc)1L
5C02A05, 5C09B05T14766
T23381
proteasome C9 complex - human
rice dbEST
316X
349N
P25789
D22304
RareSimpleuaz237(prc)6.01,9.02
csu5M95060thiol protease - rice bean65%X15732-Simplethp17.03
csu96M95070thiol protease inhibitor81%M29259- Simplecsu96(thp)9
5C03B04
rsp11, rsp21
T18671Trypsin/Factor 7A inhibitor - maize378XP01088Abnd/ESmear-
5C04F01T14729b32 protein RIP3 - maize (rip1)613XP25891Abnd/ESimpleuaz193(rip)8.04-8.05
5C04B01, 5C07A12,
5C09D11, 5C11D07
T18677
T18631
T23398
T25265
b32 protein RIP9 - maize474XP25892Abnd/ESimpleuaz156(rip)3.08
5C06F11, 5C06H09T18321
T18324
ribonculease PH homolog- E. coli
rice dbEST
94X
933N
P03842
D23232
RareSimpleuaz313(rns)8.03
5C05E10T15294metallothionein I similarity - castor bean
Arabidopsis dbEST
158X
672N
P30564
T04702
RareComplexuaz300(mtl)3.04,6.01
csu169, csu206T12751
T18790
metallothionein homolog - maize511NS57628--
6C02F11T18429actin AC1 - carrot
rice dbEST
170X
451N
J01238
D25019
Abnd/SComplexuaz233(act)8.04-8.05,6.01
7.04
5C01H03,5C08E04T18271
T23361
actin 97 - potato
Arabidopsis
rice
622X
1241N
1233N
P30171
M20016
X15863
RareComplex-
5C10D06T25221clathrin coat assembly protein - C. elegans204XP35602Rare?
5C06B09T18287profilin - maize346XP35081RareSimpleuaz305(prof)6.01
5C11B05
6C01F07, 6C04E06
csu272
T20355
T25254
a-tubulin 1 - maize
Arabidopsis
99%
1232N
X15704
M84697
Abnd /SESimpleuaz177(tua)2.00
6C02D05, 6C03A07
6C06C08, 6C06D02
T18407
T15329
T15332
T25274
a-tubulin 3 - maize558XS28429 P22275Abnd/EComplexuaz201 (tua3)5.01
6C06B09T15321a-tubulin 6 - maize584XP33627Abnd/EComplexuaz315(tua)2.09,7.04
csu148T12741calnexin - Arabidopsis192XP29402--
5C06B08T18286caltractin - Scherffeli440XX69220RareSimpleuaz322(cal)7.05
5C06D10T18301uromodulin (fibrillin) - rat105XP27590RareSimpleuaz304(hon)1.04,9.04
6C02C10T18403Ser-Lys-rich protein---Abnd/SSimple?
5C04B11, 5C05A01T14685
T14686
T15267
Ala-repeat protein---RareSimpleuaz159(gfu)5.02-5.03
6C02B04T18390Lys-Glu-rich protein---RareSimpleuaz202(gfu) 8.04
5C02D07T14784Arg-Pro-rich protein---RareSimpleuaz342(gfu)9.05-9.06
6C02F01T18421Pro-Pro-rich protein (extensin-like)---Abnd/EComplex-
6C02F03T18423Pro-Val-rich protein (extensin-like)--- Abnd/ESimpleuaz192(gfu)7.05-7.06
5C05D01T15283hydroxyproline rich(Ser,Pro) protein - rice83XS20500RareSimpleuaz341(gfu)4.05-4.06
5C07C09T18649glycine-rich cell wall protein homolog - rice101P29834RareSmear-
6C02D09T18409glycine-rich protein - tomato>68XX55691RareSmear-
csu190T18848auxin-induced mRNA - tobacco82%X56267--
5C05E12T15295ABA-induced, stress, ripening protein - tomato
rice dbEST
94X
418N
L08255
D23985
RareSimple?
csu108M95071GTP-binding protein77%M35520-Simplecsu108(gbp)5s
csu234T18813ras-related GTP-binding protein - rice64%D17779--
5C03G12, 5C07G05T14655
T23328
GTP-binding protein SAR1 - Arabidopsis
rice dbEST
354X
258N
Q01474
D21890
RareSimpleuaz151(gbp)1.09
5C04D03T18680GTP-binding protein, developmentally regulated - mouse
Arabidopsis dbEST
283X
289N
D10715
T14006
RareSimpleuaz245(gbp)7.05
5C10C02T25214GTP-binding protein YPTM2 - maize
Arabidopsis
458X
412X
Q05737
P28188
Rare?
5C01G12T18270guanine nuclear-binding protein b subunit - yeast119XS19487RareComplexuaz310(gbp)4.03-4.04,6.00
5C06B04T18285guanine nuclear-binding protein b subunit - yeast97XS19487RareSimpleuaz306(gbp)9.02
5C05C03T15277guanine nuclear-binding protein b subunit - yeast
rice dbEST
97X
175X
S19487
36095
RareSimpleuaz257(gbp)4.05-4.06
5C08C12T23353G-protein b subunit - Arabidopsis dbEST
rice dbEST
119X
594N
Z29843
D23414
Rare?
5C04C02T14687TDR3 homeotic (MADS) - tomato
rice dbEST
188X
411N
X60756
D22380
RareComplexuaz231(mad)9.07-9.08
csu137T12732
T12733
MADS box (agamous) - Arabidopsis70%X53579-Simplecsu137(mad)1.12,5.02-5.03
5C09A09T23377protein kinase (CTR1) - Arabidopsis204XL08789Rare?
5C03D08, 5C04A03T14658
T14659
T23298
protein kinase (Tousled) - Arabidopsis380XL23985RareComplexuaz130(tpk)1.12,4.05-4.06
5.02-5.03
5C04G11, 5C07B02T18714
T18715
T18633
Ca-dependent protein kinase - Arabidopsis319XL14771RareComplexuaz197 (cdpk)6.01,6.01
csu231T18811protein kinase - rat60%M16112--
csu252T18821MAP protein kinase - tobacco80%X69971--
5C08E10T23364MAP kinase (STE7) - yeast
Arabidopsis
rice dbEST
175X
>61X
364N
P06784
P25859
D24368
Rare?
5C02A07T18663protein kinase (tyr-ser-thr) Arabidopsis
rice dbEST
225X
135X
L07248
38402
RareSimpleuaz252(ptk)4.07-4.08,8.04
5C05H12,5C09D08T15315
T23397
protein kinase (tyr) homolog - pig73XQ00655RareSimpleuaz299(ptk)5.05,6.01
5C08B04T2334214-3-3 homolog - maize510XQ01526RareSimpleufg7(tau)2.05,10.05-10.06
csu64M9506614-3-3 homolog - human72%J03868-Simplecsu64(tau)1.10,2.10
5C07A05T1862714-3-3 homolog - tomato
rice dbEST
Arabidopsis dbEST
429X
955N
833N
L29150
D24218
L09109
RareComplexuaz331(tau)1.06,2s,3.05
5C04C05T14691phosphoprotein phosphatase - Drosophila218XS29396RareComplexuaz244(prh)6.06,8.03
5C06G06?T18312?transcription activator - virus206XP03209Rare?
5C04C08, 5C06D02
5C11E10
T14694
T25270
myb transfer protein similarity - virus81XA28013RareComplexuaz216(gfu)4.05-4.06
5C07C04T18641nucleolar transcription factor similarity - rat>65XP25978RareSimpleuaz335(ntf)4.05-4.06
5C03F11T23308transcription factor BTF3a - human99XJC1235Rare?
5C09C08T23392transcription factor s1Fa - spinach
rice dbEST
Arabidopsis dbEST
246X
666N
484N
X79543
D22962
T20524
Rare?
5C04D07T14709
T14710
transcription factor, Zn finger similarity - virus
rice dbEST
96X
619N
P27426
D24735
RareSimpleuaz207(tfz)2.05
csu150M95075RNA Polymerase II - yeast73%M15693 -Simplecsu150(rpo)5.02-5.03,6.01
csu17T12657
T12658
chloroplast 31kd ribonucleoprotein - tobacco60%X53942-Simplecsu17(rnp)2.09
5C02D05, 5C11F03
6C01H06
T14783
T25271
T20367
U1 small nuclear ribonucleoprotein similarity>39XM18465RareSimpleuaz346(gfu?)10.08
5C07C06T18642RNA binding protein (splicing) - Drosophila
rice dbEST
>184
276N
L04929
D24389
Rare?
fpl6RNA-binding protein - maize -Complexuaz240(rnb)1.15,5.11-5.12
6.11
5C04G05, 5C05C12T14737
T15282
RNA-binding protein (GAP-associated tyr phosphoprotein) - human
Arabidopsis dbEST
>82X

315X
M88108

49463
RareSimpleuaz214(rnb)
uaz259(rnb)
5.00
5C02G05
6C01E07, 6C02G01, 6C02G12
csu195, csu208 , csu215
T18431
T20349
T18440
T18666
T18791
T18852
T18796
glycine-rich protein, ABA - and H2O-inducible, RNA binding - maize
rice dbEST
Arabidopsis gene
133X

219N
103X
P10979
D23787
Q03250
Abnd /ESSimple?
6C02F05T18425DNA-binding protein - Drosophila73XP13469Abnd /ESSimpleuaz318(nbp)2.02-2.03,
10.08
5C08B05T23343DNA-binding protein - maize215NX66076Rare?
6C04B07, 6C06D05T15333
T25277
DNA-binding protein similarity - wheat77XP25032Abnd/SSimpleuaz179(nbp)2.06
2C06G06
5C05F12, 5C05G04,
5C06B02
T15305
T15302
T18284
T18772
CAAT box-binding protein - maize285XzmnfybRareSimpleuaz7(caat)7.01-7.02
5C06A10T18282G-Box binding factor similarity - Dictyostelium90XL29705Rare?
5C09C10T23393Drome Matern Tudor protein similarity? - Drosphila
Arabidopsis dbEST
>72X
>277X
P25823
21180
Rare?
csu56T12687leucine zipper transcript regulator- maize94XL00623-Complexcsu56(ohp)2.05
5C01G03T18267OCS-element binding factor similarity
rice dbEST
83X
582N
P24068
D23215
RareSimple?
6C01F12T20358TAT-binding homog1 - yeast
rice dbEST
242X
168X
P33297
36651
Abnd /ESSimpleuaz345(zta)5.02-5.03,5.11-5. 12
5C01A07,5C07G04T18656
T23327
TAT-binding homolog 2 - yeast172XP33298RareSimpleuaz118(zta)4.08
5C01E06T18258Paired amphipathic helix protein - yeast
Arabidopsis dbEST
105X
516N
P22579
T04565
RareSimple?
5C05C11, 5C05H07T15281
T15313
TATA-binding protein - maize
Arabidopsis dbEST
220X
146X
S32622
49207
RareSimple?
6C02C08T18401histone H2A - pea95XP25470Abnd /ESComplexuaz221 (his2a)7.04
5C04D12, 5C09G02
5C10F10,
6C06C02
csu285
T14716
T15325
T18835
T23405
T25236
histone H2B - maize
rice dbEST
Arabidopsis dbEST
300X
658N
169X
P30756
D15709
S30619
RareComplexuaz228 (his2b)1.09.2.07,
4.05-4.06,
10.04
5C03H09, 5C05D06,
5C08D05
T14800
T23317
T23357
histone H3 - Arabidopsis
rice dbEST
>494X
943N
S24346
D15959
Abnd /ESSimpleuaz248(his3)1.04,5.07
5C02C03T14777histone H4 - maize233XA25642RareSimple?
Rice54Sm-D nuclear antigen - rice----uaz290 (sdag)8.03
csu146T12739CDC48 - yeast60%X56956-Simplecsu146 (cdc48)6.01
6C01G11T20363ATPase (CDC48) - yeast67%L14616Rare?
5C08F01T23366nucleolin (topoisomerase I) - frog110XS32644Rare?
5C09D05T23395replication factor-A protein 1 - yeast>83XP22336Rare?
5C11E05T25268AC15 activator 140kd subunit - human112XP35251
5C08D02T23354DNA Polymerase I - Bacillus112XD12982Rare?
5C10D10T25298RAD16, DNA repair - yeast117XP36617Rare?
6C06D10T15336pG1 protein (transforming) - human159XA44803Rare?chloroplast?
6C02C02T18395retinoblastoma associated protein - human132XP28749Abnd /SESimpleuaz191(rap)2.09
5C04A12T14666
T14667
early nodulin - soybean
rice dbEST
230X
760N
D13506
D15238
Rare Simpleuaz227(end)6.01
6C06E02T15338early nodulin 8 - soybean
rice dbEST
95X
309N
L18899
D24693
Rare?
csu177T18838nodulin 26 similarity -
rice dbEST
70%?
D17443
--
5C03C09T25207early nodulin - soybean
rice dbEST
199X
640N
S34801
D15436
RareSimpleuaz122(end)4.05-4.06
5C01C06T14752vegetative specific protein - Dictyostelium
rice dbEST
Arabidopsis dbEST
115X
821N
814N
P14327
D15817
Z29019
Abnd/ESimpleuaz246(vsp)4.05-4.06
5C04E06,5C06H10T15305
T18322
Ac transposase similarity - maize>152XX01380RareComplexuaz285 (tpase)1.08,5.06
8.04-8.05
csu12M95061CIN4 retroelement similarity - maize67%Y00086-Complexcsu12(cin4)2.04,4.05-4.06
6C02E02,6C06C01T18413
T15324
male sterile similarity MS2 - Arabidopsis154XX73652Abnd/ESimpleuaz195(ms)4.05-4.06
csu19T12661
T12662
cold regulated gene - barley83%M60733-Simplecsu19(cld)4.03-4.04
2C02A04
csu192, csu206
T18753iron deficiency-induced gene - barley136Xbylids3-Simpleuaz80(fei)6.00
5C05G11T1530917.4kd heat shock - rice
Arabidopsis dbEST
183X
84X
P31673
33680
RareSimpleuaz264(hsp)1.03,9.05-9.06
5C02D11T1478817.6kd heat shock chloroplast - cheno
rice dbEST
182X
568N
P11890
D15924
RareSimpleuaz171(hsp)4.05-4.06
5C04F02,5C04H02T14730
T18719
T18720
18kd heat shock - maize119XP24631Abnd/ESimpleuaz210(hsp)3.02
5C04D01T14700
T14701
70kd heat shock mitochondrial - Phaseolus
rice dbEST
654X
1335N
Q01899
D15740
RareComplexuaz205(hsp)1.09,5.02-5.03
6C01E09T2035170kd heat shock - carrot
rice dbEST
153X
333N
P26791
D22078
Abnd/SComplex?
csu179
5C08E07
T18839
T23363
70kd heat shock - maize
Arabidopsis dbEST
rice dbEST
369X
344X
897N
P11143
P22953
D22323
Rare??
5C04F03, 5C04H04T18692
T18693
T14741
80kd heat shock chloroplast - spinach549XM99565RareSimpleuaz211(hsp)
uaz219(hsp)
5.02-5.03
5C07B01T1863282kd heat shock protein - Arabidopsis
rice dbEST
431X
899N
A48426
Z11920
RareSimpleuaz332(hsp)6.01
csu274T1883383kd heat shock - rice90%Z11920--
5C01G10, 5C09C12T14760
T23394
low temperature-specific gene - barley or salt stress induced hydroph - wheatgrass189XZ25537Abnd /ESSimpleuaz250(str)10.04
5C10E03T25225glycine-rich protein ua3 - tomato119XS14984Rare?
5C04C03, 5C04F07
csu133
T18697
T12729
T14688
pathogenesis related protein PR2 - bean>84S14730RareComplexuaz283(prp)2.05
5C05B11T15276wound induced basic protein - Phaseolus
rice dbEST
102X
326N
JS0731
D15315
RareSimpleuaz293(wip)4.03-4.04
rsp75wound-induced protein inhibitor similarity - tomato61XA34359--
5C07B03, 5C08A02
5C10F08,
T18634
T23338
T25234
hypothetic protein FMR1 similarity - human
rice dbEST
>84
845N
A39530
D25209
RareSimpleuaz317(fmr)1.01
5C06F05T18308essential embryonic gene - chicken
rice dbEST
139X
487N
B44882
D15882
RareSimple?
5C01F05, 5C05H02,
5C06A01
T18264
T18279
ABC1 gene similarity - yeast82XZ28353RareSimpleuaz263(abc)4.07

The following are clones which have been mapped but where sequence information is either not yet available or does not indicate a significant similarity:
Similar Sequence
I*
Clone Designation
II
GenBank Access. #
III
Putative Gene Product
IV
Score
V
Access #
VI
Express. Pattern
VII
Genomic Complexity
VIII
Locus Name
IX
Genomic Location
1C06C04uaz36(gfu)2.05
1C07A11Simpleuaz82(gfu)7.04
2C01A03T18729
T18730
a-zein by seq. but not hybrid?Simpleuaz34(gfu?)2.04
2C01A05Simpleuaz79(gfu)5.07
2C01B08T18734a-zein by hybrid but not seq.?Complexuaz66(gfu?)4.01,4.07
2C01B12Simpleuaz89(gfu)7.03
2C01C05T18735no significant similarityComplexuaz43(gfu?)6.08
2C01C09T18737no significant similaritySimpleuaz29(gfu?)2.06
2C01C11T18738extensive vector seq.?Simpleuaz98(gfu?)10.04
2C01D12T18739
T18740
extensive vector seq.?Simpleuaz3(gfu?)1.03
2C01E03Complexuaz49(gfu)2.01
2C01E11T18743no significant similaritySimpleuaz74(gfu?)4.08
2C01E12a-zein?Complexuaz48(gfu)4.05-4.06
2C01F01Complexuaz70(gfu)4.01,5.07
2C01F02T18744no significant similaritySimpleuaz24(gfu?)2.01,10.04
2C01F04T18746no significant similarityComplexuaz18(gfu?)1.09,2.06,
3.07,6.00
2C01F05Complexuaz33(gfu)2.10,4.05-4.06
2C01F07?Complexuaz35(gfu?)3.04
2C01F08Complexuaz90(gfu)7.03
2C01F10Complexuaz28(gfu)2.06,7.03-7.04
2C01F11Simpleuaz23(gfu)2.09,6.01
2C01G08?Simpleuaz72(gfu?)4.05-4.06
2C01H06T18748no significant similarityuaz2(gfu?)2.09
2C01H09Simpleuaz015(gfu)1.05
2C02A02Simpleuaz97(gfu)10.04
2C02A03T18752no significant similaritySimpleuaz27(gfu?)2.04,7.01-7.02
2C02B02T18754no significant similaritySimpleuaz95(gfu?)8.07-8.08
2C02B04T18755no significant similaritySimpleuaz20(gfu?)1.09,7.01-7.02
2C02B05?Simpleuaz2(gfu?)1.01,1.09
2C02B10Complexuaz19(gfu)1.09,3.04,
6.08,7.01-7.02
2C02F02Complexuaz14(gfu)9.07-9.08
2C02F12Complexuaz38(gfu)3.06,4.01
2C02G02?uaz4(gfu?)7.07-7.08
2C02G12a-zein by hybrid?Complexuaz069(gfu)4.01,4.03-4.04
2C02H02T18759no significant similarityComplexuaz17(gfu?)1.05,4.01
2C02H06T18760
T18761
a-zein by hybrid but not seq.?Complexuaz41(gfu?)4.01,4.05-4.06
2C02H07Complexuaz21(gfu)1.05,1.12,
2.00,10.01
2C02H08T18762several rice dbESTs including:C0962A
C1533 1A
Simpleuaz77(gfu?)5.06
2C03A07Simpleuaz37(gfu)3.05
2C03C09Complexuaz68(gfu)4.01,7.01-7.02
2C03C11Simpleuaz78(gfu)5.07
2C03D01Simpleuaz92(gfu)7.04
2C03D02Simpleuaz84(gfu)7.01-7.02
2C03G04T18763
T18764
no significant similaritySimpleuaz96(gfu?)9.07-9.08
2C03G07T23310no significant similaritySimpleuaz83(gfu)7.01-7.02
2C03H04Simpleuaz71(gfu)4.05-4.06,
5.11-5.12
2C04B10Simpleuaz4(gfu)1.04
2C04C03Simpleuaz1(gfu)1.02
2C04D01Simpleuaz81(gfu)6.08
2C04E02Simpleuaz22(gfu)1.15
2C04H05uaz75(gfu)5.00
2C04F10Simpleuaz39gfu)3.09
2C04G04T18765a-zein by hybrid but not seq?Complexuaz65(gfu?)4.01,4.08
2C05A02a-zein by hybrid?Complexuaz7(gfu)4.01
2C05C05Simpleuaz40(gfu)9.07-9.08
3C01A08uaz110(gfu)3.09
3C01B04uaz111(gfu)5.04,5.06
3C01C03?uaz112(gfu?)9.05-9.06
5C01A01RareSimpleuaz116(gfu)10.02-10.03
5C01A06,5C015E06T18655Arabidopsis dbEST>4914637RareComplexuaz117(gfu?)3.10,7.04
10.04
5C01C05T14751a-zein by seq but not hybrid?RareSimpleuaz128(gfu?)8.10
5C01C08Abnd /ESSimpleuaz147(gfu)7.04-7.05
5C01G07RareComplexuaz114(gfu)3.09
5C01H02Abnd/ESimpleuaz168(gfu)5.07
5C01D11, 5C02A09
5C04G03,5C05A02
T14736
T14768
T15268
T14759
no significant similarityRareSimpleuaz273(gfu?)
uaz276(gfu?)
uaz253(gfu?)
1.05
5C02A11T18664rice dbEST480ND16016RareComplexuaz274(rest)1.05,2.08
5C02B05T14772human ORF HUMRSC399-177XD13642RareSimpleuaz275 (hest)5.05
5C02B08T14774no significant similarityRareComplexuaz286(gfu?)1.09
5C02D10T14787no significant similarityRareSimpleuaz170(gfu?)4.05-4.06
5C02E07T25205no significant similarityRareSimpleuaz148(gfu)9.07-9.08
5C02G02T18665no significant similarityRareComplexuaz288(gfu?)2.02-2.03,3.05
5C02G08T18667ORF - fungi>82XP09379RareSimpleuaz281(yorf)4.05-4.06
5C03C07RareSimpleuaz120(gfu)1.02
5C03C08, 5C06H11,
5C08E01
T18325
?
T23293
no significant similarityRareSimpleuaz121(gfu)6.06,8.04
5C03D03rice dbEST355X37832Abund /E?
5C03E06, 5C04B06,
5C09B07,
T14677
T23300
T23383
yeast cDNA YBL0507235XZ23261RareComplexuaz241(yest)2.09,7.05
5C04E11RareComplexuaz173(gfu)7.01-7.02
5C03G07T23310H326, ubiq expressed gene - human143XU06631RareComplexuaz123(gfu)4.08,6.10
7.03-7.04
5C03H11T18674rice dbEST>396ND15619Abnd /ESSimpleuaz186(rest)5.05
5C04A02T14657PPDK seq similarity?RareSimpleuaz153(gfu?)10.02-10.03
5C04A05?no significant similarity??uaz131(gfu?)?
5C04B09T14682
T14683
no significant similarityRareComplexuaz287(gfu?)6.04-6.05
5C04B11, 5C05A01
T14685
T14686
no significant similarityRareSimpleuaz159(gfu?)5.02-5.03
5C04C01T23315no significant similarityRareSimpleuaz160(gfu)6.04-6.05
5C04C07, 5C08D03T14692
T14693
no significant similarityRareSimpleuaz199(gfu?)7.04
5C04C09T14695
T14696
no significant similarityRareComplexuaz289(gfu?)9.02
5C04C10RareSimpleuaz203(gfu)1.05
5C02B03, 5C04C12
5C10E06
T14699
T25228
no significant similarityRareSimpleuaz187(gfu?)7.01-7.02
5C04D02T14702
T14703
no significant similarityRareComplexuaz279(gfu?)4.08,5.07
5C04D07T14709
T14710
rice dbESTD24735
D23733
RareSimpleuaz207(gfu?)2.05
5C01F06, 5C04E03T14717
T14718
Arabidopsis dbEST178X40286RareSimpleuaz209(gfu?)6.06
5C04F03T18692
T18693
no significant similarityRareSimpleuaz211(gfu?)5.02-5.03
5C04F06, 5C05G10
5C10F02
T14731
T25231
yeast ORF YBL026111XZ35787RareSimpleuaz212(gfu?)4.03-4.04
5C04F09T18699rice dbESTD23229RareSimpleuaz271(gfu?)3.10
5C04H05, 5C04E10
5C04H07, 5C09G11
T14742
T14728
T14744
T23407
no significant similarityRareSimpleuaz278(gfu?)7.05
5C05B06T15275no significant similarityRareSimpleuaz256(gfu?)6.08
5C05C08T15279no significant similarityRareSimpleuaz258(gfu?)6.01,8.05
5C05D02T14782no significant similarityRareComplexuaz267(gfu?)1.02
5C05D08, 5C10E12T15286
T25230
Arabidopsis dbEST187X48449Rare?
5C05E08T15293rice dbEST
Arabidopsis dbEST
298X
269X
38193
21098
Rare?
5C05F04T15297rice dbESTD22938RareSimpleuaz262(gfu?)2.06
5C01E08, 5C04A09,
5C05G02
T15304
T14664
no significant similarityRareSimpleuaz349(gfu?)4.05-4.06
5C05F08T15300Arabidopsis dbEST130X52289Rare?
5C05H10, 5C07H02T15314
T23334
Arabidopsis dbEST>42X33669RareComplexuaz268(gfu?)1.11,5.13
7.01-7.02
5C06A03T18280no significant similarityRareSimpleuaz307(gfu?)8.01
5C06C11T18295no significant similarityRareSimpleuaz302(gfu?)2.06
5C06E09T18305no significant similarityRareSimpleuaz311(gfu?)1.05-1.06
5C06G02, 5C08E06T18309
T23362
no significant similarityRareSimpleuaz314(gfu?)1.02
5C06G11T18317no significant similarityRareSimpleuaz316(gfu?)1.02
5C07A01RareSimpleuaz330(gfu)6.01
5C07B03T18634no significant similarityRareSimpleuaz317(gfu?)9.09
5C07B04T18635no significant similarityRareSimpleuaz323(gfu?)?
5C07B09T18638no significant similarityRareSimpleuaz333(gfu?)8.08,?
5C07B10RareSimpleuaz325(gfu)5.05
5C07B12?no significant similarityRareSimpleuaz343(gfu?)4.07
5C07C01T18640no significant similarityRareSimpleuaz326(gfu?)1.04
5C07C02RareSimpleuaz334(gfu)2.08
5C07C05RareSimpleuaz328(gfu)8.08
5C07C11RareSimpleuaz336(gfu)6.01
5C07H06T23336human dbEST>41X27225Rare?
5C10A12T25213Arabidopsis dbEST
rice dbEST
505N
415N
T21425
D23534
Rare?
5C10D01T25219rice dbEST548ND15308Rare?
5C10D12T25222rice dbEST400ND23153Rare?
5C10F02T25231yeast ORF111XZ35787Rare?
5C11B12T25256Arabidopsis dbEST560NT21425Rare?
6C01B07T20375no significant similarityRareSimpleuaz174(gfu?)4L,8.09
6C01B09T20376no significant similarityRareComplexuaz175(gfu?)4.08,10.04
6C01C11T20380rice cDNA80%D24362Abnd /SESimpleuaz344(rest)2.05,7.01-7.02
6C01D08T20397no significant similarityAbnd/SSimpleuaz140(gfu?)2.09
6C01E05RareSimpleuaz125(gfu)9.05-9.06
6C01E10RareComplexuaz176(gfu)3.07,8.07-8.08
6C01F02T20353no significant similarityAbnd/SSimpleuaz162(gfu?)6.01
6C01F06T20354no significant similarityAbnd/SComplexuaz164(gfu?)3.03,3.08,
5.07,8.06
6C01G04T20360Arabidopsis dbEST 70%Z24464Abnd /SE?
6C01G05T20391no significant similarityRareComplexuaz138(gfu?)1.09,5.07
8.07
6C01H07T20395rice dbEST 83%D23915Abnd /SE?
6C02F05T18425no significant similarityRareSimpleuaz318(gfu?)2.02-2.03,10.08
6C03A07T25274Arabidopsis dbEST
rice dbEST
524X
1117N
P29511
Z11931
Abnd /SEComplexuaz163(gfu)5.02-5.03
6C03A08Abnd /SEComplexuaz134(gfu)5.01
6C03G05Abnd/SSimpleuaz135(gfu)2.06
6C04B04T25275no significant similarityAbnd/SSimpleuaz178(gfu)10.02-10.03
6C04B05T25276no significant similarityRareSimpleuaz165(gfu)8.04-8.05
6C04B11Abnd /SESimpleuaz166(gfu)1.12,5.02-5.03
6C04C04T25278no significant similarityAbnd /SESimpleuaz143(gfu)7.01-7.02
6C04C05Abnd /SEComplexuaz180(gfu)4.02
6C04C06Abnd /SESimpleuaz142(gfu)4.05-4.06
6C04C08RareSimpleuaz181(gfu)2.06
6C04D10Abnd/SSimpleuaz137(gfu)4.05-4.06
6C04E01Abnd /SESimpleuaz139(gfu)1.03
6C04E06T25279no significant similarityAbnd /SESimpleuaz167(gfu)1.11,5.02-5.03
6C04F04Abnd/ESimpleuaz141(gfu?)9.03
6C06A03T15340C. elegans ORF108XL14745Abnd/SSimpleuaz136(cest)7.03
6C06A10RareSimpleuaz133(gfu)3.09
6C06C06T15327E. coli ORF125XP22564RareComplex-
csu3T12525
T12526
no significant similarity-Simplecsu3(gfu?)1.05
csu4T12527no significant similarity-Simplecsu4(gfu?)2.06
csu6T12528
T12529
rice dbESTD22140-Complexcsu6(gfu?)10.04
csu7T12530
T12531
rice dbESTD24964
D24860
D24862
-Complexcsu7(gfu?)1.15,7.01-7.02
csu9T12534no significant similarity-Simplecsu9(gfu?)2.10
csu10T12535
T12536
no significant similarity-Simplecsu10(gfu?)5.02-5.03
csu11T12653
T12654
no significant similarity-Simplecsu11(gfu?)7.01-7.02
csu29T12666no significant similarity-Simplecsu29(gfu?)8.02
csu31T12667
T12668
no significant similarity-Simplecsu31(gfu?)8.07-8.08
csu32T12669Arabidopsis dbEST27017-Simplecsu32(gfu?)3.01
csu33T12670no significant similarity-Complexcsu33(gfu?)5.01
csu46T12676rice dbESTD24411-Simplecsu46(gfu?)2.06
csu48T12677
T12678
Arabidopsis dbEST70%Z17560-Complexcsu48(gfu?)5.02-5.03
csu49T12679
T12680
no significant similarity-Simplecsu49(gfu?)2.06
csu50?no significant similarity-Simplecsu50(gfu?)9.07-9.08
csu54T12684no significant similarity-Simplecsu54(gfu?)2.08
csu58T12688no significant similarity-Simplecsu58(gfu?)9.05-9.06
csu60T12690no significant similarity-Simplecsu60(gfu?)1.05
csu1T12705no significant similarity-Complexcsu01(gfu?)4.05-4.06
csu93T12714no significant similarity-Simplecsu93(gfu?)7.01-7.02
csu95T12716rice dbESTD15970-Simplecsu95(gfu?)9.01
csu100T12717no significant similarity-Complexcsu100(gfu?)4.05-4.06
csu103T12719rice dbEST65%D24020-Simplecsu103(gfu?)10.02-10.03
csu147T12740no significant similarity-Complexcsu147(gfu?)2.06
csu163T12747no significant similarity-Simplecsu163(gfu?)8.09
csu166T12749no significant similarity-Complexcsu166(gfu?)2.10,4.05-4.06
csu168?no significant similarity-Simplecsu168(gfu?)5.05
csu171T12752rice dbEST84%D15402--
csu217T18798Arabidopsis dbEST66%T04175--
csu222T18802rice dbEST83%D26538--
csu244T18817rice dbEST85%D23592--
csu245T18818Arabidopsis dbEST66%Z17549--
csu249T18819rice dbEST80%D22191--
csu268T18830rice dbEST67%D15599--
rsp31no significant similarity-Simpleuaz105(gfu?)1.05
rsp48no significant similarityComplexuaz048(gfu?)1.01
rsp54no significant similarity-Complexuaz107(gfu?)4.01
rsp84no significant similarity-Complexuaz106(gfu?)2.04,6.02-6.03
spf16no significant similarity-Complexuaz31(gfu?)2.08,7.04
9.07-9.08
spf29no significant similarity-Simpleuaz11(gfu?)1.04


Please Note: Notes submitted to the Maize Genetics Cooperation Newsletter may be cited only with consent of the authors

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