VII. BAC CONTIGS AND THEIR GENETIC ANCHORS
BAC contigs and CB positions of anchoring loci are
from the maize FPC at Arizona (http://www.genome.arizona.edu/fpc/maize/). Genetic positions are based on the IBM2
high resolution map (http://www.maizegdb.org), computed from a 302 member panel
of Stocks for inter-mated B73 x Mo17 recombinant inbreds. This mapping panel is available from
the Maize Genetics Cooperation Stock Center and described by Lee et al. (Plant
Mol. Biol. 48:453-461, 2003).
Columns:
Bins are provided for the locus that
approximates, on this list, the boundary of a bin; when it corresponds to a
Core Marker, which define the bin boundaries, the corresponding locus and
coordinate information is in bold face.
Contig: the number of the contig,
as defined in the current (July 2005) FPC build.
CB: the position in a contig for a marker based on
the consensus band (restriction fragment) for clones. In maize the CB is 4900 bp (http://www.genome.arizona.edu/fpc/maize/).
IBM: the IBM2 cM position, for loci flagged by
an asterisk (*). Other loci have
the approximate value from the IBM2 2005 neighbors computation. Contigs anchored by unpublished loci
are provided the genetic position listed in FPC for a contig; in many instances
these anchorings are based on rice-maize synteny of markers. Most of the FPC markers, both SSRs and
overgos, were developed from maize cDNAs (ESTs; Unigenes). (Gardiner et al.,
Plant Physiol. 134:1317:1326, 2004).
Locus: Loci flagged by an asterisk are taken from
the IBM2 map, which uses the high resolution 302 member inter-mated IBM mapping
population of Mike Lee. Other loci
are from the IBM2 2006 Neighbors map, a serial projection of genetic maps
stored in MaizeGDB onto the IBM2 frame.
Shaded areas on each chromosome are
approximate centromere locations, based on the Genetiic 2005 map compilations
of Ed Coe (MNL 79; MaizeGDB).
Submitted by
Mary Schaeffer (Polacco)
|
Chromosome 1 |
||||
|
BIN |
BAC FPC: Contig |
CB |
Genetic IBM |
Locus |
|
1.00 |
1 |
22 |
-0.12 |
bnlg149 |
|
|
|
382 |
-0.01 |
umc1613 |
|
|
|
413 |
0 |
umc1353 |
|
|
|
416 |
0 |
umc1354* |
|
|
|
440 |
0 |
bnlg1124 |
|
1.01 |
|
454 |
2.5 |
tub1* |
|
|
2 |
115 |
10.5 |
dmt103b |
|
|
|
139 |
10.5 |
umc1177* |
|
|
|
159 |
16.5 |
umc1566* |
|
|
|
165 |
16.5 |
umc2183 |
|
|
3 |
40 |
26.1 |
mmp102* |
|
|
|
40 |
31.1 |
AY110314* |
|
|
|
110 |
31.11 |
umc1619 |
|
|
|
129 |
31.11 |
csu589 |
|
|
|
229 |
48.7 |
lim179* |
|
|
|
330 |
48.71 |
AY107629 |
|
|
|
343 |
52.59 |
csu680a |
|
|
|
343 |
48.71 |
umc1292 |
|
|
|
344 |
48.71 |
bnlg1179 |
|
|
4 |
45 |
68.3 |
mlo1* |
|
|
|
50 |
68.3 |
umc1041 |
|
|
|
84 |
68.3 |
gpb1 |
|
|
|
114 |
68.31 |
umc1106 |
|
|
|
156 |
68.31 |
PCO072650 |
|
|
|
222 |
82.8 |
bnlg1014* |
|
|
|
291 |
87.4 |
umc2012* |
|
|
|
372 |
88 |
umc1071* |
|
|
|
410 |
86.3 |
umc1269* |
|
|
|
412 |
88.3 |
umc1305 |
|
|
|
422 |
88.3 |
smt2 |
|
|
|
437 |
88.3 |
gst31 |
|
|
|
483 |
89.2 |
umc1977* |
|
|
|
543 |
89.2 |
prc3 |
|
|
|
551 |
91.5 |
umc1948* |
|
|
5 |
20 |
102.99 |
AY110853 |
|
|
|
68 |
103 |
umc2215 |
|
|
|
82 |
103 |
umc1685* |
|
|
|
382 |
108.3 |
umc1160* |
|
|
|
470 |
110.9 |
umc2224* |
|
1.02 |
|
534 |
113.87 |
umc157a(chn)* |
|
|
6 |
171 |
124.69 |
bnlg1178 |
|
|
|
172 |
124.69 |
esr2 |
|
|
|
300 |
124.7 |
umc2225* |
|
|
|
325 |
133.6 |
umc1166* |
|
|
|
410 |
133.61 |
PCO128140 |
|
|
|
488 |
141.8 |
umc1568* |
|
|
7 |
18 |
143.5 |
bnlg1429* |
|
|
8 |
48 |
160.53 |
pds1 |
|
|
|
314 |
160.55 |
bnlg1627 |
|
|
|
332 |
160.55 |
umc2191 |
|
|
|
562 |
160.58 |
umc1467 |
|
|
|
794 |
160.6 |
umc1976* |
|
|
|
819 |
165.8 |
umc2226* |
|
|
|
1033 |
166 |
mmp135* |
|
|
9 |
20 |
170 |
bnlg1953* |
|
|
|
371 |
170.04 |
umc1711 |
|
|
|
621 |
170.06 |
bnlg1007 |
|
|
|
846 |
114.7 |
gln6 |
|
|
|
949 |
170.09 |
bnlg1803 |
|
1.03 |
|
1097 |
198.06 |
umc76a* |
|
|
10 |
98 |
204.95 |
umc2383 |
|
|
|
584 |
205 |
lim122* |
|
|
11 |
40 |
210.6 |
umc1403* |
|
|
|
392 |
210.64 |
umc2397 |
|
|
|
405 |
219 |
bnlg1484* |
|
|
|
1167 |
225.4 |
AY109929* |
|
|
|
1230 |
225.41 |
umc2185 |
|
|
||||