Plant Genome BIOINFORMATICS Outreach Consortium 2015
Exhibit Booth 407 BANNER
PAG XXIII San Diego, CA
Exhibit area open
Jan 11 Sun 3 – 8:30 pm
Jan 12 Mon 9:30 am – 5 pm
Jan 13 Tues 9:30 am – 3 pm
A consortium to provide personal outreach at the Plant and Animal Genome Meetings XXIII for several public database resources.
Bring your information requests and suggestions to the booth.
This page serves as a bulletin board for presentations at the meeting related to these data resources. Crop Ontology, Gramene, JCVI Plant Genomics: Arabidopsis Information Portal Araport, Medicago truncatula, Legume Information System (all legumes), MainLab Bionformatics, MaizeGDB Oryzabase, Phoenix Bioinformatics/ The Arabidopsis Information Resource [TAIR], Plant Ontology , Plant Genome Database Japan PGDBj, NIAS SoyBase , SoyKB
Schedule of representatives at the booth from participating resources at peak times (Sun reception, poster sessions).
Please see talks and posters listed below.
Crop Ontology (www.cropontology.org) is developed in the framework of the Integrated Breeding Platform (https://www.integratedbreeding.net/, Generation Challenge Programme) by the CGIAR agricultural community and partners for harmonizing the capture of field data by breeders and standardized annotations across genotypic and phenotypic data sources. CO currently includes: banana, barley, cassava, chickpea, common bean, cowpea, groundnut, maize, pearl millet, pigeon pea, potato, rice, sorghum, soybean, wheat, yam.
Gramene (Reference plant genomes with focus on rice, maize and Arabidopsis) The Gramene Project is a collaboration between Cold Spring Harbor Laboratory (CSHL), Oregon State University (OSU), the European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL - EBI), the Ontario Cancer Research Institute (OCIR), and the American Society of Plant Biologists (ASPB).
WORKSHOP Tues 1:30 – 3:40 pm Jan 13 Gramene Project
Workshop Talks Mon 1:35 pm Jan 12 A Walk through the Araport Web Site
Mon 2:15 pm Jan 12 A Plant Ontology Web Service for the AIP
Mon 2:35 pm Jan 12 Exposing Web Services for the Arabidopsis Information Portal
Mon 2:55 pm Jan 12 Developing Applications for the Arabidopsis Information Portal
Computer Demo Mon 1:50 pm Jan 12 Methods for Collecting, Integrating, and Displaying Complex Genetic Data, Using the Legume Information System and PeanutBase
Workshop talk Sun 8:45 am Jan 11 QTL Data Standards at PeanutBase and LegumeInfo
Posters: P0493 Tools for Phylogenomic Exploration within and Among Clade-Oriented Databases; P0697 The Legume Information System (LegumeInfo.org) 2015; P1123 An Ontology Approach to Comparative Phenomics in the Plants: Arabidopsis, Tomato, Maize, Rice, Soybean and Medicago
Workshop Sun 4 - 6:10 pm Jan 10 Tripal Database Network and Initiatives
Computer Demo Mon 1:30 pm Jan 12. The Reinvention of MaizeGDB
Workshop talk Sun 9:12 am Jan 11 Curating Maize Diversity: Plant Trait Ontology Annotations for GWAS and QTL Data
Workshop talk 9:30 am Sun Jan 11 An Ontology Approach to Comparative Phenomics in Plants
Workshop talk TAIR as a Model for Database Sustainability
Workshop talk 8:40 am Sat Jan 10 New Phytologist and the Plant Ontology: Working Together to Enhance Journal Content
Workshop talk 9:12 am Sun Jan 11 Curating Maize Diversity: Plant Trait Ontology Annotations for GWAS and QTL Data
Workshop talk Sun Jan 11 8:36 am Phenotypes as an Organizing Principle at SoyBase and LegumeInfo Databases
Poster P0695 WhatŐs new at SoyBase?
Poster P0694 Soybean Knowledge Base (SoyKB)